Dear Samuel,

Could you please provide your exact version of GCC, Boost and sparsehash?

Please also provide us, in attachements, the complete output of the
./configure script, the full contents of the config.log file, and the
entire output (not truncated) of the make command?

Best,
Tiago

Am 11.11.21 um 00:28 schrieb Samuel Fusato:
> Hello everyone,
>
> I apologize if this is not the right place to post this issue. I am
> trying to install graph-tool on a RHEL7 within a virtualenv (I have
> Jupyterhub running on it).
>
> ================================================================================
>
> CONFIGURATION SUMMARY
> ================================================================================
>
> Using python version: 3.6.3
> Python interpreter: /jupyter/bin/python
> Installation path: /jupyter/lib/python3.6/site-packages/graph_tool
>
> C++ compiler (CXX): g++ -std=gnu++17
> C++ compiler version: 7
>
> Prefix: /root/.local
> Pkgconfigdir: ${libdir}/pkgconfig
>
> Python CPP flags: -I/jupyter/lib/python3.6/site-packages/cairo/include
> -I/opt/rh/rh-python36/root/usr/include/python3.6m
> Python LD flags: -L/opt/rh/rh-python36/root/usr/lib64 -lpython3.6m
> Boost CPP flags: -pthread -I/usr/include
> Boost LD flags: -L/usr/lib64 -lboost_iostreams-mt -lboost_python36
> -lboost_regex-mt -lboost_context-mt
> Numpy CPP flags: -I/jupyter/lib/python3.6/site-packages/numpy/core/include
> Sparsehash CPP flags:
> CGAL CPP flags: -I/usr/include
> CGAL LD flags:
> Expat CPP flags:
> Expat LD flags: -lexpat
> Cairomm CPP flags: -I/usr/include/cairomm-1.0
> -I/usr/lib64/cairomm-1.0/include -I/usr/include/cairo
> -I/usr/include/sigc++-2.0 -I/usr/lib64/sigc++-2.0/include
> -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include
> -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng15
> -I/usr/include/uuid -I/usr/include/libdrm
> Cairomm LD flags: -lcairomm-1.0 -lcairo -lsigc-2.0
> OpenMP compiler flags: -fopenmp
> OpenMP LD flags:
> Extra CPPFLAGS: -DNDEBUG
> Extra CXXFLAGS: -fopenmp -O3 -fvisibility=default
> -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra
> -ftemplate-backtrace-limit=0
> Extra LDFLAGS:
>
> Using OpenMP: yes
> Using sparsehash: yes
> Using cairo: yes
> ================================================================================
>
>
> However, when trying to install it, I receive the following errors (I
> truncated the output by adding the ellipsis):
>
> (...)
> blockmodel/graph_blockmodel_emat.hh:126:12: error:
> ‘graph_tool::EHash<boost::adj_list<long unsigned int> >::ehash_t {aka
> class gt_hash_map<long unsigned int,
> boost::detail::adj_edge_descriptor<long unsigned int>, std::hash<long
> unsigned int>, std::equal_to<long unsigned int>,
> std::allocator<std::pair<const long unsigned int,
> boost::detail::adj_edge_descriptor<long unsigned int> > > >}’ has no
> member named ‘min_load_factor’; did you mean ‘max_load_factor’?
>           _h.min_load_factor(.25);
>           ~~~^~~~~~~~~~~~~~~
>           max_load_factor
> (...)
> blockmodel/graph_blockmodel_gibbs.cc:55:49:   required from here
> blockmodel/graph_blockmodel_emat.hh:126:12: error:
> ‘graph_tool::EHash<boost::undirected_adaptor<boost::adj_list<long
> unsigned int> > >::ehash_t {aka class gt_hash_map<long unsigned int,
> boost::detail::adj_edge_descriptor<long unsigned int>, std::hash<long
> unsigned int>, std::equal_to<long unsigned int>,
> std::allocator<std::pair<const long unsigned int,
> boost::detail::adj_edge_descriptor<long unsigned int> > > >}’ has no
> member named ‘min_load_factor’; did you mean ‘max_load_factor’?
>           _h.min_load_factor(.25);
>           ~~~^~~~~~~~~~~~~~~
>           max_load_factor
> In file included from blockmodel/graph_blockmodel_util.hh:25:0,
>                   from blockmodel/graph_blockmodel_gibbs.cc:23:
> blockmodel/graph_blockmodel_entries.hh:453:6: error: ‘void graph_tool:
> (...)
> td::vector<std::vector<double, std::allocator<double> >,
> std::allocator<std::vector<double, std::allocator<double> > > >,
> std::vector<double, std::allocator<double> >, std::vector<double,
> std::allocator<double> >, std::vector<double, std::allocator<double> >};
> size_t = long unsigned int]::<lambda(auto:127&)>’, is used but never
> defined [-fpermissive]
>   void move_entries(Vertex v, size_t r, size_t nr, VProp& _b, Graph& g,
>        ^~~~~~~~~~~~
> blockmodel/graph_blockmodel_entries.hh:453:6: error: ‘void graph_tool::m
> (...)
>   int> > > >, boost::adj_list<long unsigned int>, std::vector<double,
> std::allocator<double> >, std::vector<double, std::allocator<double> >
>  >]::<lambda(auto:99, auto:100, auto:101&, auto:102, auto:103& ...)>’,
> is used but never defined [-fpermissive]
>   void entries_op(MEntries& m_entries, EMat& emat, OP&& op)
>        ^~~~~~~~~~
> blockmodel/graph_blockmodel_entries.hh:485:6: error: ‘void graph_tool:
> (...)
> :vector<double, std::allocator<double> > >]::<lambda(auto:99, auto:100,
> auto:101&, auto:102, auto:103& ...)>’, is used but never defined
> [-fpermissive]
> make[3]: *** [blockmodel/graph_blockmodel_gibbs.lo] Error 1
> make[3]: Leaving directory
> `/jupyter/grapth-tool/graph-tool-2.43/src/graph/inference'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/jupyter/grapth-tool/graph-tool-2.43/src/graph'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/jupyter/grapth-tool/graph-tool-2.43/src'
> make: *** [install-recursive] Error 1
> (jupyter) [root@workstation /jupyter/grapth-tool/graph-tool-2.43]#
>
> Please, let me know if it is possible to make any assumptions based on
> the above logs I shared. If not, let me know what you need and I will do
> my best to provide.
>
> Thank you,
>
> SAMUEL FUSATO
>
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--
Tiago de Paula Peixoto <tiago@skewed.de>
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