Hello

I am installing graph tools in my Biolinux 7 machine.. I installed boost and the commands used for compilation are

% sudo ./bootstrap.sh                                                [12:38PM]
[sudo] password for oilseed31:
Building Boost.Build engine with toolset gcc... tools/build/src/engine/bin.linuxx86_64/b2
Detecting Python version... 2.7
Detecting Python root... /usr
Unicode/ICU support for Boost.Regex?... /usr
Backing up existing Boost.Build configuration in project-config.jam.2
Generating Boost.Build configuration in project-config.jam...

Bootstrapping is done. To build, run:

    ./b2
   
To adjust configuration, edit 'project-config.jam'.
Further information:

   - Command line help:
     ./b2 --help
    
   - Getting started guide:
     http://www.boost.org/more/getting_started/unix-variants.html
    
   - Boost.Build documentation:
     http://www.boost.org/boost-build2/doc/html/index.html

 % sudo ./b2                                                          [12:39PM]

Building the Boost C++ Libraries.


Performing configuration checks

    - 32-bit                   : no  (cached)
    - 64-bit                   : yes (cached)
    - arm                      : no  (cached)
    - mips1                    : no  (cached)
    - power                    : no  (cached)
    - sparc                    : no  (cached)
    - x86                      : yes (cached)
    - lockfree boost::atomic_flag : yes (cached)
    - has_icu builds           : yes (cached)
warning: Graph library does not contain MPI-based parallel components.
note: to enable them, add "using mpi ;" to your user-config.jam
    - zlib                     : yes (cached)
    - iconv (libc)             : yes (cached)
    - icu                      : yes (cached)
    - compiler-supports-ssse3  : yes (cached)
    - compiler-supports-avx2   : no  (cached)
    - gcc visibility           : yes (cached)
    - long double support      : yes (cached)
warning: skipping optional Message Passing Interface (MPI) library.
note: to enable MPI support, add "using mpi ;" to user-config.jam.
note: to suppress this message, pass "--without-mpi" to bjam.
note: otherwise, you can safely ignore this message.
    - zlib                     : yes (cached)

Component configuration:

    - atomic                   : building
    - chrono                   : building
    - container                : building
    - context                  : building
    - coroutine                : building
    - date_time                : building
    - exception                : building
    - filesystem               : building
    - graph                    : building
    - graph_parallel           : building
    - iostreams                : building
    - locale                   : building
    - log                      : building
    - math                     : building
    - mpi                      : building
    - program_options          : building
    - python                   : building
    - random                   : building
    - regex                    : building
    - serialization            : building
    - signals                  : building
    - system                   : building
    - test                     : building
    - thread                   : building
    - timer                    : building
    - wave                     : building

...patience...
...patience...
...patience...
...patience...
...patience...
...patience...
...found 13350 targets...


The Boost C++ Libraries were successfully built!

The following directory should be added to compiler include paths:

    /home/oilseed31/Downloads/boost_1_57_0

The following directory should be added to linker library paths:

    /home/oilseed31/Downloads/boost_1_57_0/stage/lib

But when I installed graphtool the commands used are
 % ./configure                                                        [ 9:46AM]
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for gcc option to accept ISO C99... unsupported
checking for gcc option to accept ISO C89... (cached) none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C++ preprocessor... g++ -E
checking for ANSI C header files... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking target system type... x86_64-unknown-linux-gnu
checking whether to enable debug info...... no
checking whether C++ compiler supports -std=gnu++11... no
checking whether to enable function inlining...... yes
checking whether to enable optimizations...... yes
checking whether to enable symbol visibility manipulation...... yes
checking whether to enable parallel algorithms with openmp...... no
checking whether to enable cairo drawing...... yes
checking for main in -lm... yes
checking for main in -lbz2... yes
checking for main in -lexpat... yes
================
Detecting python
================
checking for a Python interpreter with version >= 2.6... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/dist-packages
checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages
checking for python2.7... (cached) /usr/bin/python
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python == '2.7.3'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/usr/include/python2.7
checking for Python library path... -L/usr/lib -lpython2.7
checking for Python site-packages path... /usr/lib/python2.7/dist-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
graph-tool will be installed at: /usr/lib/python2.7/dist-packages
===========================
Using python version: 2.7.3
===========================
checking for boostlib >= 1.53.0... yes
checking whether the Boost::Python library is available... yes
checking for exit in -lboost_python... yes
checking whether the Boost::Iostreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Graph library is available... yes
checking for exit in -lboost_graph... yes
checking for main in -lCGAL... yes
checking whether to cgal debbuging with valgrind...... no
checking python module: numpy... yes
checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes
checking python module: scipy... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes
checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking CGAL/version.h usability... yes
checking CGAL/version.h presence... yes
checking for CGAL/version.h... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for CAIROMM... no
configure: error: Package requirements (cairomm-1.0) were not met:

Package expat was not found in the pkg-config search path.
Perhaps you should add the directory containing `expat.pc'
to the PKG_CONFIG_PATH environment variable
Package 'expat', required by 'Fontconfig', not found

Consider adjusting the PKG_CONFIG_PATH environment variable if you
installed software in a non-standard prefix.

Alternatively, you may set the environment variables CAIROMM_CFLAGS
and CAIROMM_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.

 % ./configure --disable-cairo                                        [ 9:50AM]
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for gcc option to accept ISO C99... unsupported
checking for gcc option to accept ISO C89... (cached) none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C++ preprocessor... g++ -E
checking for ANSI C header files... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking target system type... x86_64-unknown-linux-gnu
checking whether to enable debug info...... no
checking whether C++ compiler supports -std=gnu++11... no
checking whether to enable function inlining...... yes
checking whether to enable optimizations...... yes
checking whether to enable symbol visibility manipulation...... yes
checking whether to enable parallel algorithms with openmp...... no
checking whether to enable cairo drawing...... no
checking for main in -lm... yes
checking for main in -lbz2... yes
checking for main in -lexpat... yes
================
Detecting python
================
checking for a Python interpreter with version >= 2.6... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/dist-packages
checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages
checking for python2.7... (cached) /usr/bin/python
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python == '2.7.3'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/usr/include/python2.7
checking for Python library path... -L/usr/lib -lpython2.7
checking for Python site-packages path... /usr/lib/python2.7/dist-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
graph-tool will be installed at: /usr/lib/python2.7/dist-packages
===========================
Using python version: 2.7.3
===========================
checking for boostlib >= 1.53.0... yes
checking whether the Boost::Python library is available... yes
checking for exit in -lboost_python... yes
checking whether the Boost::Iostreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Graph library is available... yes
checking for exit in -lboost_graph... yes
checking for main in -lCGAL... yes
checking whether to cgal debbuging with valgrind...... no
checking python module: numpy... yes
checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes
checking python module: scipy... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes
checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking CGAL/version.h usability... yes
checking CGAL/version.h presence... yes
checking for CGAL/version.h... yes
checking whether to enable sparsehash...... yes
checking for SPARSEHASH... no
not found by pkgconfig, trying default...
checking sparsehash/dense_hash_set usability... no
checking sparsehash/dense_hash_set presence... no
checking for sparsehash/dense_hash_set... no
configure: error: sparsehash headers not found


 % ./configure --disable-sparsehash --disable-cairo                   [ 9:51AM]
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for gcc option to accept ISO C99... unsupported
checking for gcc option to accept ISO C89... (cached) none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C++ preprocessor... g++ -E
checking for ANSI C header files... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking target system type... x86_64-unknown-linux-gnu
checking whether to enable debug info...... no
checking whether C++ compiler supports -std=gnu++11... no
checking whether to enable function inlining...... yes
checking whether to enable optimizations...... yes
checking whether to enable symbol visibility manipulation...... yes
checking whether to enable parallel algorithms with openmp...... no
checking whether to enable cairo drawing...... no
checking for main in -lm... yes
checking for main in -lbz2... yes
checking for main in -lexpat... yes
================
Detecting python
================
checking for a Python interpreter with version >= 2.6... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/dist-packages
checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages
checking for python2.7... (cached) /usr/bin/python
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python == '2.7.3'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/usr/include/python2.7
checking for Python library path... -L/usr/lib -lpython2.7
checking for Python site-packages path... /usr/lib/python2.7/dist-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions
checking consistency of all components of python development environment... yes
graph-tool will be installed at: /usr/lib/python2.7/dist-packages
===========================
Using python version: 2.7.3
===========================
checking for boostlib >= 1.53.0... yes
checking whether the Boost::Python library is available... yes
checking for exit in -lboost_python... yes
checking whether the Boost::Iostreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Graph library is available... yes
checking for exit in -lboost_graph... yes
checking for main in -lCGAL... yes
checking whether to cgal debbuging with valgrind...... no
checking python module: numpy... yes
checking for /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h... yes
checking python module: scipy... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h usability... yes
checking /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h presence... yes
checking for /usr/lib/python2.7/dist-packages/scipy/weave/scxx/object.h... yes
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking CGAL/version.h usability... yes
checking CGAL/version.h presence... yes
checking for CGAL/version.h... yes
checking whether to enable sparsehash...... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/graph/Makefile
config.status: creating src/graph/centrality/Makefile
config.status: creating src/graph/clustering/Makefile
config.status: creating src/graph/community/Makefile
config.status: creating src/graph/correlations/Makefile
config.status: creating src/graph/draw/Makefile
config.status: creating src/graph/flow/Makefile
config.status: creating src/graph/generation/Makefile
config.status: creating src/graph/layout/Makefile
config.status: creating src/graph/search/Makefile
config.status: creating src/graph/spectral/Makefile
config.status: creating src/graph/stats/Makefile
config.status: creating src/graph/topology/Makefile
config.status: creating src/graph/util/Makefile
config.status: creating src/graph_tool/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: Modifying libtool to correctly link libstdc++ before anything else..

sudo make
::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0l>, LastIterator = boost::mpl::v_iter<boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 6l>, TransformFunc = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
/usr/local/include/boost/mpl/for_each.hpp:104:5:   instantiated from ‘void boost::mpl::for_each(F, Sequence*, TransformOp*) [with Sequence = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, TransformOp = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
/usr/local/include/boost/mpl/for_each.hpp:118:3:   instantiated from ‘void boost::mpl::for_each(F, Sequence*) [with Sequence = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
./../mpl_nested_loop.hh:100:5:   instantiated from ‘void boost::mpl::nested_for_each_imp(Action) [with TR1 = boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, TRS = {boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >, boost::adj_list<long unsigned int>*>]’
./../mpl_nested_loop.hh:91:9:   instantiated from ‘void boost::mpl::inner_loop<Action, TRS>::operator()(T) const [with T = boost::adj_list<long unsigned int>*, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > >, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}]’
/usr/local/include/boost/mpl/for_each.hpp:78:9:   instantiated from ‘static void boost::mpl::aux::for_each_impl<false>::execute(Iterator*, LastIterator*, TransformFunc*, F) [with Iterator = boost::mpl::v_iter<graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, 0l>, LastIterator = boost::mpl::v_iter<graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, 6l>, TransformFunc = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
/usr/local/include/boost/mpl/for_each.hpp:104:5:   instantiated from ‘void boost::mpl::for_each(F, Sequence*, TransformOp*) [with Sequence = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, TransformOp = boost::mpl::identity<mpl_::na>, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
/usr/local/include/boost/mpl/for_each.hpp:118:3:   instantiated from ‘void boost::mpl::for_each(F, Sequence*) [with Sequence = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, F = boost::mpl::inner_loop<boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >]’
./../mpl_nested_loop.hh:100:5:   instantiated from ‘void boost::mpl::nested_for_each_imp(Action) [with TR1 = graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::dispatch<boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > > >]’
./../mpl_nested_loop.hh:113:5:   instantiated from ‘void boost::mpl::nested_for_each(Action) [with TRS = {graph_tool::detail::graph_action<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, graph_tool::detail::all_graph_views, mpl_::bool_<false>, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0> >::graph_view_pointers, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}, Action = boost::mpl::selected_types<graph_tool::detail::action_wrap<std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, mpl_::bool_<false> > >]’
./../graph_filtering.hh:489:9:   instantiated from ‘void graph_tool::detail::graph_action<Action, GraphViews, Wrap, TRS>::operator()(Args&& ...) const [with Args = {boost::any&, boost::any&}, Action = std::_Bind<do_all_pairs_search(std::_Placeholder<1>, boost::typed_identity_property_map<long unsigned int>, std::_Placeholder<2>, std::_Placeholder<3>, bool)>, GraphViews = graph_tool::detail::all_graph_views, Wrap = mpl_::bool_<false>, TRS = {boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<double>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<long int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<short int>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<std::vector<unsigned char>, boost::typed_identity_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, boost::mpl::v_item<graph_tool::ConstantPropertyMap<long unsigned int, boost::adj_list<long unsigned int>::edge_descriptor>, boost::mpl::v_item<boost::adj_edge_index_property_map<long unsigned int>, boost::mpl::v_item<boost::checked_vector_property_map<long double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<double, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<long int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<short int, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::v_item<boost::checked_vector_property_map<unsigned char, boost::adj_edge_index_property_map<long unsigned int> >, boost::mpl::vector0<mpl_::na>, 0>, 0>, 0>, 0>, 0>, 0>, 0>, 0>}]’
graph_all_distances.cc:80:26:   instantiated from here
/usr/include/c++/4.6/bits/stl_algobase.h:546:6: error: use of deleted function ‘boost::detail::stored_edge_property<Vertex, Property>::self& boost::detail::stored_edge_property<Vertex, Property>::operator=(boost::detail::stored_edge_property<Vertex, Property>::self&&) [with Vertex = long unsigned int, Property = boost::property<boost::edge_weight_t, long double, boost::property<boost::edge_weight2_t, long double, boost::no_property> >, boost::detail::stored_edge_property<Vertex, Property>::self = boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, long double, boost::property<boost::edge_weight2_t, long double, boost::no_property> > >]’
At global scope:
cc1plus: warning: unrecognised command line option "-Wno-unused-local-typedefs" [enabled by default]
make[4]: *** [graph_a
ll_distances.lo] Error 1
make[4]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src/graph/topology'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src/graph'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/oilseed31/Downloads/graph-tool-2.2.36'
make: *** [all] Error 2



Kindly fix this error. I need graph tools for a software DIRT (http://www.plant-image-analysis.org/software/dirt)

Regards,

Sakshi Bharti
Research fellow 
Department of Plant Breeding and Genetics (Oilseeds Section) 
Punjab Agricultural University
Ludhiana-141004
India