> Hi all,
>
> The following seems to fix that problem
>
>
http://thinkingcan.blogspot.fi/2013/09/fixed-importerror-cannot-import-name.html>
> I will summarize here:
>
> +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
> Fixed! ImportError: cannot import name MAXREPEAT
>
> Earlier today, I upgraded my Ubuntu box from 12.04 to 12.10. I noticed
> that Pidgin wouldn't launch so I opened up Terminal (ctrl+alt+t) and
> tried to run Pidgin through there. I noticed that I got the following
> stack trace:
>
> Traceback (most recent call last):
> File "/usr/local/lib/python2.7/site.py", line 548, in <module>
> main()
> File "/usr/local/lib/python2.7/site.py", line 530, in main
> known_paths = addusersitepackages(known_paths)
> File "/usr/local/lib/python2.7/site.py", line 266, in addusersitepackages
> user_site = getusersitepackages()
> File "/usr/local/lib/python2.7/site.py", line 241, in getusersitepackages
> user_base = getuserbase() # this will also set USER_BASE
> File "/usr/local/lib/python2.7/site.py", line 231, in getuserbase
> USER_BASE = get_config_var('userbase')
> File "/usr/local/lib/python2.7/sysconfig.py", line 516, in get_config_var
> return get_config_vars().get(name)
> File "/usr/local/lib/python2.7/sysconfig.py", line 449, in get_config_vars
> import re
> File "/usr/local/lib/python2.7/re.py", line 105, in <module>
> import sre_compile
> File "/usr/local/lib/python2.7/sre_compile.py", line 14, in <module>
> import sre_parse
> File "/usr/local/lib/python2.7/sre_parse.py", line 17, in <module>
> from sre_constants import *
> File "/usr/local/lib/python2.7/sre_constants.py", line 18, in <module>
> from _sre import MAXREPEAT
> ImportError: cannot import name MAXREPEAT
>
>
> After some research, I found that I should run virtualenv. This did
> not work. Instead, I found a fix. It doesn't feel right but it's a fix
> none the less. If you look closely, you can see that the problem is
> that there is a field missing that needs to be accessed in
> sre_constants.py. So I changed the
>
> from _sre import MAXREPEAT
>
>
> To:
>
> try:
> from _sre import MAXREPEAT
> except ImportError:
> import _sre
> _sre.MAXREPEAT = 65535 # Oh man. I hate myself so much.
>
> Hope that works for you!
>
> +++++++++++++++++++++++++++++++++++++++++++++++++
>
> Now make install seems to runs properly. However, when I try to import
> graph_tool from sage it do not succeed:
>
> juan@mostro:~/Downloads/sage-6.1.1$ ./sage -python
> Python 2.7.5 (default, Feb 11 2014, 07:30:05)
> [GCC 4.6.3] on linux2
> Type "help", "copyright", "credits" or "license" for more information.
>>>> import graph_tool
> Traceback (most recent call last):
> File "<stdin>", line 1, in <module>
> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/__init__.py",
> line 100, in <module>
> dl_import("from . import libgraph_tool_core as libcore")
> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/dl_import.py",
> line 57, in dl_import
> exec(import_expr, local_dict, global_dict)
> File "<string>", line 1, in <module>
> ImportError: libboost_iostreams.so.1.55.0: cannot open shared object
> file: No such file or directory
>
> So, it seems that graph-tool is not finding the "python.boost" lib
> required. However, this is strange as I provided to configure the path
> to a local (at my home directory) installation of boost. More
> specifically, I had run
>
> (sage-sh) juan@mostro:graph-tool-2.2.29.1$ ./configure
> CPPFLAGS="-I/home/juan/usr/local/include/boost"
> LDFLAGS="-L/home/juan/usr/local/lib"
> SPARSEHASH_CFLAGS="-I/usr/include/google/sparsehash"
>
> The local installation of boost is at /home/juan/usr/local/, and the
> corresponding paths seems to be provided at the configuration stage of
> graph-tool. I do not understand what went wrong. Any ideas?
>
> Best Regards,
> Juan
>
> On Wed, Feb 12, 2014 at 8:12 AM, Juan Ignacio Perotti
> <
[hidden email]> wrote:
>> Hi,
>>
>> Thanks for the recommendation Tiago. I went further this time and
>> successfully went though the ./configure and make stage. However, when I run
>> make install something goes wrong. Below I post the relevant part of the
>> procedure according to my judgement. First I go into sage's virtual
>> environment by typing
>>
>> $ sage -sh
>>
>> Then I run:
>>
>> (sage-sh) juan@mostro:graph-tool-2.2.29.1$ ./configure
>> CPPFLAGS="-I/home/juan/usr/local/include/boost"
>> LDFLAGS="-L/home/juan/usr/local/lib"
>> SPARSEHASH_CFLAGS="-I/usr/include/google/sparsehash"
>>
>> some bla bla bla
>>
>> (sage-sh) juan@mostro:graph-tool-2.2.29.1$ make
>>
>> after many hours...it seems to success. Finally I try to install
>>
>> (sage-sh) juan@mostro:graph-tool-2.2.29.1$ sudo make install
>>
>> Making install in src
>> make[1]: Entering directory `/home/juan/Downloads/graph-tool-2.2.29.1/src'
>> Making install in graph
>> make[2]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> Making install in centrality
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/centrality'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/centrality'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_centrality.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_centrality.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality/libgraph_tool_centrality.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_centrality.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality/libgraph_tool_centrality.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/centrality
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_closeness.hh graph_eigentrust.hh
>> graph_eigenvector.hh graph_pagerank.hh graph_hits.hh graph_katz.hh
>> graph_trust_transitivity.hh minmax.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/centrality'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/centrality'
>> Making install in clustering
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/clustering'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/clustering'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_clustering.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_clustering.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering/libgraph_tool_clustering.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_clustering.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering/libgraph_tool_clustering.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/clustering
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_clustering.hh graph_extended_clustering.hh
>> graph_motifs.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/clustering'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/clustering'
>> Making install in community
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/community'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/community'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_community.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_community.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community/libgraph_tool_community.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_community.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community/libgraph_tool_community.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/community
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_blockmodel.hh graph_community.hh
>> graph_community_network.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/community'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/community'
>> Making install in correlations
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/correlations'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/correlations'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_correlations.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_correlations.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations/libgraph_tool_correlations.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_correlations.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations/libgraph_tool_correlations.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/correlations
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_assortativity.hh graph_correlations.hh
>> graph_corr_hist.hh graph_avg_correlations.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/correlations'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/correlations'
>> Making install in draw
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/draw'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/draw'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_draw.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_draw.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw/libgraph_tool_draw.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_draw.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw/libgraph_tool_draw.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/draw'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/draw'
>> Making install in flow
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/flow'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/flow'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_flow.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_flow.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow/libgraph_tool_flow.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_flow.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow/libgraph_tool_flow.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/flow
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_augment.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/flow'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/flow'
>> Making install in generation
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/generation'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/generation'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_generation.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_generation.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation/libgraph_tool_generation.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_generation.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation/libgraph_tool_generation.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/generation
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_generation.hh graph_rewiring.hh
>> graph_predecessor.hh graph_union.hh graph_triangulation.hh graph_lattice.hh
>> graph_geometric.hh graph_complete.hh graph_price.hh dynamic_sampler.hh
>> sampler.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/generation'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/generation'
>> Making install in layout
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/layout'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/layout'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_layout.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_layout.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw/libgraph_tool_layout.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_layout.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw/libgraph_tool_layout.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/draw
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_arf.hh graph_sfdp.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/layout'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/layout'
>> Making install in search
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/search'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/search'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_search.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_search.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search/libgraph_tool_search.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_search.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search/libgraph_tool_search.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/search
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/search'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/search'
>> Making install in spectral
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/spectral'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/spectral'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_spectral.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_spectral.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral/libgraph_tool_spectral.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_spectral.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral/libgraph_tool_spectral.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/spectral
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_adjacency.hh graph_incidence.hh
>> graph_laplacian.hh graph_transition.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/spectral'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/spectral'
>> Making install in stats
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/stats'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/stats'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_stats.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_stats.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats/libgraph_tool_stats.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_stats.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats/libgraph_tool_stats.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/stats
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_parallel.hh graph_histograms.hh
>> graph_average.hh graph_distance_sampled.hh graph_distance.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/stats'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/stats'
>> Making install in topology
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/topology'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/topology'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_topology.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_topology.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_topology.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology/libgraph_tool_topology.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/topology
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_components.hh graph_kcore.hh
>> graph_similarity.hh graph_subgraph_isomorphism.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/topology'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/topology'
>> Making install in util
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/util'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/util'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util'
>> /bin/bash ../../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_util.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_util.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util/libgraph_tool_util.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_util.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util/libgraph_tool_util.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/util
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 graph_search.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/util'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph/util'
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> make[4]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> make[4]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool'
>> /bin/bash ../../libtool --mode=install /usr/bin/install -c
>> libgraph_tool_core.la
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool'
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_core.so
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/libgraph_tool_core.so
>> libtool: install: /usr/bin/install -c .libs/libgraph_tool_core.lai
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/libgraph_tool_core.la
>> libtool: finish:
>> PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin"
>> ldconfig -n
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool
>> ----------------------------------------------------------------------
>> Libraries have been installed in:
>>
>> /home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool
>>
>> If you ever happen to want to link against installed libraries
>> in a given directory, LIBDIR, you must either use libtool, and
>> specify the full pathname of the library, or use the `-LLIBDIR'
>> flag during linking and do at least one of the following:
>> - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>> during execution
>> - add LIBDIR to the `LD_RUN_PATH' environment variable
>> during linking
>> - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>> - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>>
>> See any operating system documentation about shared libraries for
>> more information, such as the ld(1) and ld.so(8) manual pages.
>> ----------------------------------------------------------------------
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /usr/bin/install -c -m 644 ../../config.h fast_vector_property_map.hh
>> gml.hh graph.hh graph_adjacency.hh graph_adaptor.hh graph_exceptions.hh
>> graph_filtering.hh graph_properties.hh graph_properties_group.hh
>> graph_python_interface.hh graph_selectors.hh graph_util.hh histogram.hh
>> mpl_nested_loop.hh numpy_bind.hh numpy_bind_old.hh random.hh str_repr.hh
>> shared_map.hh transform_iterator.hh
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include'
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include/boost-workaround/boost/graph/'
>> /usr/bin/install -c -m 644
>> ../boost-workaround/boost/graph/betweenness_centrality.hpp
>> ../boost-workaround/boost/graph/detail/read_graphviz_new.hpp
>> ../boost-workaround/boost/graph/graphml.hpp
>> ../boost-workaround/boost/graph/graphviz.hpp
>> ../boost-workaround/boost/graph/isomorphism.hpp
>> ../boost-workaround/boost/graph/kamada_kawai_spring_layout.hpp
>> ../boost-workaround/boost/graph/metric_tsp_approx.hpp
>> ../boost-workaround/boost/graph/named_function_params-alt.hpp
>> ../boost-workaround/boost/graph/overloading.hpp
>> ../boost-workaround/boost/graph/push_relabel_max_flow.hpp
>> ../boost-workaround/boost/graph/copy_alt.hpp
>> ../boost-workaround/boost/graph/reverse_graph_alt.hpp
>> ../boost-workaround/boost/graph/stoer_wagner_min_cut.hpp
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool/include/boost-workaround/boost/graph/'
>> make[4]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> make[2]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph'
>> Making install in graph_tool
>> make[2]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph_tool'
>> make[3]: Entering directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph_tool'
>> make[3]: Nothing to be done for `install-exec-am'.
>> /bin/mkdir -p
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool'
>> /usr/bin/install -c -m 644 __init__.py dl_import.py decorators.py io.py
>> all.py
>> '/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site-packages/graph_tool'
>> make[3]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph_tool'
>> make[2]: Leaving directory
>> `/home/juan/Downloads/graph-tool-2.2.29.1/src/graph_tool'
>> make[1]: Leaving directory `/home/juan/Downloads/graph-tool-2.2.29.1/src'
>> Traceback (most recent call last):
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site.py", line
>> 548, in <module>
>> main()
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site.py", line
>> 530, in main
>> known_paths = addusersitepackages(known_paths)
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site.py", line
>> 266, in addusersitepackages
>> user_site = getusersitepackages()
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site.py", line
>> 241, in getusersitepackages
>> user_base = getuserbase() # this will also set USER_BASE
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/site.py", line
>> 231, in getuserbase
>> USER_BASE = get_config_var('userbase')
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/sysconfig.py",
>> line 516, in get_config_var
>> return get_config_vars().get(name)
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/sysconfig.py",
>> line 449, in get_config_vars
>> import re
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/re.py", line
>> 105, in <module>
>> import sre_compile
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/sre_compile.py",
>> line 14, in <module>
>> import sre_parse
>> File "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/sre_parse.py",
>> line 17, in <module>
>> from sre_constants import *
>> File
>> "/home/juan/Downloads/sage-6.1.1/local/lib/python2.7/sre_constants.py", line
>> 18, in <module>
>> from _sre import MAXREPEAT
>> ImportError: cannot import name MAXREPEAT
>> make[3]: *** [install-graph_toolPYTHON] Error 1
>> make[2]: *** [install-am] Error 2
>> make[1]: *** [install-recursive] Error 1
>> make: *** [install-recursive] Error 1
>>
>> It seems that sage's Python is trying to import recursively some module. But
>> I am not sure how to fix this. Any ideas?
>>
>> Best Regards,
>> Juan
>>
>>
>>
>> On Tue, Feb 11, 2014 at 11:45 AM, Tiago Peixoto [via Main discussion list
>> for the graph-tool project] <
[hidden email]>
>> wrote:
>>>
>>> On 02/09/2014 09:01 AM, Juan I. Perotti wrote:
>>>
>>> > Hello,
>>> >
>>> > I am trying to install graph-tool in sagemath ( check
>>> >
http://www.sagemath.org/ <
http://www.sagemath.org/> ), under Ubuntu
>>> > 12.04.
>>> >
>>> > Basically, sagemath is python with many good modules helpful for
>>> > mathematics, and why not physics.
>>> >
>>> > sagemath has its own built version of python, which is standard by using
>>> > a
>>> > virtual environment. The idea is, I guess, not to mess up with your
>>> > system
>>> > python.
>>> >
>>> > By typing in a terminal
>>> >
>>> > $ sage -sh
>>> >
>>> >
>>> > you enter into sagemath virtual environment, which looks like:
>>> >
>>> > (sage -sh) $
>>> >
>>> >
>>> > therefore, if you try to run a python console by typing
>>> >
>>> > (sage -sh)$ python
>>> >
>>> >
>>> > then, it will run the python built in sage's virtual environment.
>>> >
>>> > From the virtual environment I have installed CGAL, and then, I tried to
>>> > configure graph-tool typing:
>>> >
>>> > (sage -sh) graph-tool-2.2.29$ ./configure
>>> > checking for a BSD-compatible install... /usr/bin/install -c
>>> > checking whether build environment is sane... yes
>>> > checking for a thread-safe mkdir -p... /bin/mkdir -p
>>> > checking for gawk... no
>>> > checking for mawk... mawk
>>> > checking whether make sets $(MAKE)... yes
>>> > checking whether make supports nested variables... yes
>>> > checking whether make supports nested variables... (cached) yes
>>> > checking for style of include used by make... GNU
>>> > checking for gcc... gcc
>>> > checking whether the C compiler works... yes
>>> > checking for C compiler default output file name... a.out
>>> > checking for suffix of executables...
>>> > checking whether we are cross compiling... no
>>> > checking for suffix of object files... o
>>> > checking whether we are using the GNU C compiler... yes
>>> > checking whether gcc accepts -g... yes
>>> > checking for gcc option to accept ISO C89... none needed
>>> > checking whether gcc understands -c and -o together... yes
>>> > checking dependency style of gcc... gcc3
>>> > checking for library containing strerror... none required
>>> > checking how to run the C preprocessor... cpp
>>> > checking for grep that handles long lines and -e... /bin/grep
>>> > checking for egrep... /bin/grep -E
>>> > checking for ANSI C header files... yes
>>> > checking for sys/types.h... yes
>>> > checking for sys/stat.h... yes
>>> > checking for stdlib.h... yes
>>> > checking for string.h... yes
>>> > checking for memory.h... yes
>>> > checking for strings.h... yes
>>> > checking for inttypes.h... yes
>>> > checking for stdint.h... yes
>>> > checking for unistd.h... yes
>>> > checking minix/config.h usability... no
>>> > checking minix/config.h presence... no
>>> > checking for minix/config.h... no
>>> > checking whether it is safe to define __EXTENSIONS__... yes
>>> > checking whether we are using the GNU C++ compiler... yes
>>> > checking whether g++ accepts -g... yes
>>> > checking dependency style of g++... gcc3
>>> > checking for gcc option to accept ISO C99... unsupported
>>> > checking for gcc option to accept ISO C89... (cached) none needed
>>> > checking for gcc option to accept ISO Standard C... (cached) none needed
>>> > checking how to run the C++ preprocessor... g++ -E
>>> > checking for ANSI C header files... (cached) yes
>>> > checking build system type... x86_64-unknown-linux-gnu
>>> > checking host system type... x86_64-unknown-linux-gnu
>>> > checking how to print strings... printf
>>> > checking for a sed that does not truncate output... /bin/sed
>>> > checking for fgrep... /bin/grep -F
>>> > checking for ld used by gcc... ld
>>> > checking if the linker (ld) is GNU ld... yes
>>> > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
>>> > checking the name lister (/usr/bin/nm -B) interface... BSD nm
>>> > checking whether ln -s works... yes
>>> > checking the maximum length of command line arguments... 1572864
>>> > checking whether the shell understands some XSI constructs... yes
>>> > checking whether the shell understands "+="... yes
>>> > checking how to convert x86_64-unknown-linux-gnu file names to
>>> > x86_64-unknown-linux-gnu format... func_convert_file_noop
>>> > checking how to convert x86_64-unknown-linux-gnu file names to toolchain
>>> > format... func_convert_file_noop
>>> > checking for ld option to reload object files... -r
>>> > checking for objdump... objdump
>>> > checking how to recognize dependent libraries... pass_all
>>> > checking for dlltool... no
>>> > checking how to associate runtime and link libraries... printf %s\n
>>> > checking for archiver @FILE support... @
>>> > checking for strip... strip
>>> > checking for ranlib... ranlib
>>> > checking command to parse /usr/bin/nm -B output from gcc object... ok
>>> > checking for sysroot... no
>>> > checking for mt... mt
>>> > checking if mt is a manifest tool... no
>>> > checking for dlfcn.h... yes
>>> > checking for objdir... .libs
>>> > checking if gcc supports -fno-rtti -fno-exceptions... no
>>> > checking for gcc option to produce PIC... -fPIC -DPIC
>>> > checking if gcc PIC flag -fPIC -DPIC works... yes
>>> > checking if gcc static flag -static works... yes
>>> > checking if gcc supports -c -o file.o... yes
>>> > checking if gcc supports -c -o file.o... (cached) yes
>>> > checking whether the gcc linker (ld -m elf_x86_64) supports shared
>>> > libraries... yes
>>> > checking whether -lc should be explicitly linked in... no
>>> > checking dynamic linker characteristics... GNU/Linux ld.so
>>> > checking how to hardcode library paths into programs... immediate
>>> > checking whether stripping libraries is possible... yes
>>> > checking if libtool supports shared libraries... yes
>>> > checking whether to build shared libraries... yes
>>> > checking whether to build static libraries... no
>>> > checking how to run the C++ preprocessor... g++ -E
>>> > checking for ld used by g++... ld -m elf_x86_64
>>> > checking if the linker (ld -m elf_x86_64) is GNU ld... yes
>>> > checking whether the g++ linker (ld -m elf_x86_64) supports shared
>>> > libraries... yes
>>> > checking for g++ option to produce PIC... -fPIC -DPIC
>>> > checking if g++ PIC flag -fPIC -DPIC works... yes
>>> > checking if g++ static flag -static works... yes
>>> > checking if g++ supports -c -o file.o... yes
>>> > checking if g++ supports -c -o file.o... (cached) yes
>>> > checking whether the g++ linker (ld -m elf_x86_64) supports shared
>>> > libraries... yes
>>> > checking dynamic linker characteristics... (cached) GNU/Linux ld.so
>>> > checking how to hardcode library paths into programs... immediate
>>> > checking target system type... x86_64-unknown-linux-gnu
>>> > checking whether to enable debug info...... no
>>> > checking whether C++ compiler supports -std=gnu++11... yes
>>> > checking whether to enable function inlining...... yes
>>> > checking whether to enable optimizations...... yes
>>> > checking whether to enable symbol visibility manipulation...... yes
>>> > checking whether to enable graph filtering...... yes
>>> > checking whether to enable parallel algorithms with openmp...... no
>>> > checking whether to enable cairo drawing...... yes
>>> > checking whether to enable sparsehash...... yes
>>> > checking for main in -lm... yes
>>> > checking for main in -lbz2... yes
>>> > checking for main in -lexpat... yes
>>> > ================
>>> > Detecting python
>>> > ================
>>> > checking for a Python interpreter with version >= 2.6... python
>>> > checking for python...
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/python
>>> > checking for python version... 2.7
>>> > checking for python platform... linux2
>>> > checking for python script directory...
>>> > ${prefix}/lib/python2.7/site-packages
>>> > checking for python extension module directory...
>>> > ${exec_prefix}/lib/python2.7/site-packages
>>> > checking for python2.7... (cached)
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/python
>>> > checking for a version of Python >= '2.1.0'... yes
>>> > checking for a version of Python == '2.7.5'... yes
>>> > checking for the distutils Python package... yes
>>> > checking for Python include path...
>>> >
>>> > -I/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include/python2.7
>>> > checking for Python library path...
>>> >
>>> > -L/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local/lib
>>> > -lpython2.7
>>> > checking for Python site-packages path...
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages
>>> > checking python extra libraries... -lpthread -ldl -lutil
>>> > checking python extra linking flags... -Xlinker -export-dynamic
>>> > checking consistency of all components of python development
>>> > environment...
>>> > yes
>>> > graph-tool will be installed at:
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages
>>> > ===========================
>>> > Using python version: 2.7.5
>>> > ===========================
>>> > checking for boostlib >= 1.38.0... yes
>>> > checking whether the Boost::Python library is available... yes
>>> > checking for exit in -lboost_python... yes
>>> > checking whether the Boost::Iostreams library is available... yes
>>> > checking for exit in -lboost_iostreams... yes
>>> > checking whether the Boost::Regex library is available... yes
>>> > checking for exit in -lboost_regex... yes
>>> > checking whether the Boost::Graph library is available... yes
>>> > checking for exit in -lboost_graph... yes
>>> > checking for main in -lCGAL... yes
>>> > checking whether to cgal debbuging with valgrind...... no
>>> > checking python module: numpy... yes
>>> > checking for
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h...
>>> > yes
>>> > checking python module: scipy... yes
>>> > checking
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h
>>> > usability... yes
>>> > checking
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h
>>> > presence... yes
>>> > checking for
>>> >
>>> > /home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/python2.7/site-packages/scipy/weave/scxx/object.h...
>>> > yes
>>> > checking expat.h usability... yes
>>> > checking expat.h presence... yes
>>> > checking for expat.h... yes
>>> > checking CGAL/version.h usability... no
>>> > checking CGAL/version.h presence... no
>>> > checking for CGAL/version.h... no
>>> > configure: error: CGAL headers not found
>>> >
>>> >
>>> > As you can see, the config is using sage's version of python. However,
>>> > it
>>> > does not find CGAL's headers. Do you know why?
>>> Where did you install CGAL? If you installed it in a non-standard
>>> directory, this needs to be passed to the configure script via the
>>> CPPFLAGS and LDFLAGS variables.
>>>
>>> Check the output in the config.log file, which includes the reason why
>>> CGAL was not found. You can post the contents of this file to the list,
>>> if you are unable to find the problem.
>>>
>>> Best,
>>> Tiago
>>>
>>> --
>>> Tiago de Paula Peixoto <[hidden email]>
>>>
>>>
>>> _______________________________________________
>>> graph-tool mailing list
>>> [hidden email]
>>>
http://lists.skewed.de/mailman/listinfo/graph-tool>>>
>>> signature.asc (919 bytes) Download Attachment
>>> --
>>> Tiago de Paula Peixoto <
[hidden email]>
>>>
>>>
>>> ________________________________
>>> If you reply to this email, your message will be added to the discussion
>>> below:
>>>
>>>
http://main-discussion-list-for-the-graph-tool-project.982480.n3.nabble.com/Installing-graph-tool-in-sagemath-tp4025299p4025300.html>>> To unsubscribe from Installing graph-tool in sagemath, click here.
>>> NAML
>>
>>
>>
>>
>> --
>> Dr. Juan I. Perotti
>>
>> Postal Address:
>> Aalto University
>> Department of Biomedical Engineering and Computational Science (BECS)
>> P.O. Box 12200
>> FI-00076 AALTO, FINLAND
>> Visiting Address:
>> F-building, room F344, Rakentajanaukio 2, Otaniemi campus, Espoo
>> Tel. + 358 50 5927 858 / + 358 46 6306 650
>> Email: juanpool (at) gmail (dot) com
>> Email: juan.perotti (at) aalto (dot) fi
>> Home page: www.perottijuanignacio.com.ar
>
>
>
> --
> Dr. Juan I. Perotti
>
> Postal Address:
> Aalto University
> Department of Biomedical Engineering and Computational Science (BECS)
> P.O. Box 12200
> FI-00076 AALTO, FINLAND
> Visiting Address:
> F-building, room F344, Rakentajanaukio 2, Otaniemi campus, Espoo
> Tel. + 358 50 5927 858 / + 358 46 6306 650
> Email: juanpool (at) gmail (dot) com
> Email: juan.perotti (at) aalto (dot) fi
> Home page: www.perottijuanignacio.com.ar